| ARCHETYPE ID | openEHR-EHR-CLUSTER.general_sequencing_result_parameter.v0 |
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| Concept | General sequencing result parameter |
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| Description | General sequencing result parameter. |
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| Use | Use to report general sequencing result parameter determined for the genome by a sequencing test.
This archetype is meant to be used in the "Test result" SLOT of the Laboratory test result observation archetype. |
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| Misuse | Not to be used to report genetic variants, but only general parameters that are determined once per sequencing run. |
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| Purpose | To record general sequencing result parameter of a performed sequencing test. |
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| References | |
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| Authors | Author name: Aurelie Tomczak
Organisation: Institute of Pathology, University Hospital Heidelberg
Email: au.tomczak@yahoo.com
Date originally authored: 2020-07-17
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| Other Details Language | Author name: Aurelie Tomczak
Organisation: Institute of Pathology, University Hospital Heidelberg
Email: au.tomczak@yahoo.com
Date originally authored: 2020-07-17
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| Other Details (Language Independent) | - Licence: This work is licensed under the Creative Commons Attribution-ShareAlike 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/4.0/.
- Custodian Organisation: HiGHmed
- Original Namespace: org.openehr
- Original Publisher: openEHR Foundation
- Custodian Namespace: org.highmed
- MD5-CAM-1.0.1: F563A5B83D40B0B5A3126D64A68E49CB
- Build Uid: de129512-5619-473d-a80a-269b01c57df7
- Revision: 0.0.1-alpha
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| Keywords | Tumor cell content, BRCAness, Microsatellite instability (MSI), Tumor Mutational Burden (TMB) per Mb, Sequencing result parameter, Whole genome sequencing, Targeted sequencing |
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| Lifecycle | in_development |
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| UID | 662cbae0-6ab8-4ad9-a847-547e69b5c356 |
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| Language used | en |
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| Citeable Identifier | 1246.145.1291 |
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| Revision Number | 0.0.1-alpha |
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| items | |
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| Sequenced tissue type | Sequenced tissue type: Normal vs. tumor sample.
Choice of:
 Coded Text
- at0002::Normal tissue [Identifies germline mutations.]
- at0003::Tumor tissue [Identifies somatic mutations.]
 Text
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| Tumor cell content (pathologic/histologic) | Tumor cell content (pathologic/histologic): Tumor cell content determinded by pathologic/histologic methods.
Choice of:
 Quantity
Property: Qualified real
Units: % Proportion
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| Tumor cell content (bioinformatic) | Tumor cell content (bioinformatic): Tumor cell content determinded by bioinformatic methods.
Choice of:
- Proportion
- Quantity
Property: Qualified real
Units: %
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| Microsatellite instability (MSI) | Microsatellite instability (MSI): Microsatellite instability (MSI).
Choice of:
 Count
min: >=0; max: <=2
- Quantity
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| Tumor Mutational Burden (TMB) per Mb | Tumor Mutational Burden (TMB) per Mb: Tumor Mutational Burden (TMB) per Megabase.
Choice of:
- Count
- Quantity
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| BRCAness | BRCAness: BRCAness is defined as a phenotypic copy of germline BRCA mutations.
min: >=0; max: <=1
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| Further result parameter | Further result parameter: Cluster to include additional result parameter not already defined above. |
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| Parameter name | Parameter name: Parameter name.
Choice of:
- Text
- Coded Text
 Identifier
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| Parameter value | Parameter value: Parameter value. |
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| Qualitative parameter interpretation | Qualitative parameter interpretation: Qualitative parameter interpretation, if applicable. |
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| Other contributors | |
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| Translators | German: Aurelie Tomczak, au.tomczak@yahoo.com, Institute of Pathology, University Hospital Heidelberg
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