ARCHETYPE ID | openEHR-EHR-CLUSTER.general_sequencing_result_parameter.v0 |
Concept | General sequencing result parameter |
Description | General sequencing result parameter. |
Use | Use to report general sequencing result parameter determined for the genome by a sequencing test. This archetype is meant to be used in the "Test result" SLOT of the Laboratory test result observation archetype. |
Misuse | Not to be used to report genetic variants, but only general parameters that are determined once per sequencing run. |
Purpose | To record general sequencing result parameter of a performed sequencing test. |
References | |
Authors | Author name: Aurelie Tomczak Organisation: Institute of Pathology, University Hospital Heidelberg Email: au.tomczak@yahoo.com Date originally authored: 2020-07-17 |
Other Details Language | Author name: Aurelie Tomczak Organisation: Institute of Pathology, University Hospital Heidelberg Email: au.tomczak@yahoo.com Date originally authored: 2020-07-17 |
OtherDetails Language Independent | {licence=This work is licensed under the Creative Commons Attribution-ShareAlike 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/4.0/., custodian_organisation=HiGHmed, original_namespace=org.openehr, original_publisher=openEHR Foundation, custodian_namespace=org.highmed, MD5-CAM-1.0.1=D29DAAA9079EEC0DC606871E6266F676, build_uid=d42de821-caab-46a8-93d2-01a84b34d20e, revision=0.0.1-alpha} |
Keywords | Tumor cell content, BRCAness, Microsatellite instability (MSI), Tumor Mutational Burden (TMB) per Mb, Sequencing result parameter, Whole genome sequencing, Targeted sequencing |
Lifecycle | in_development |
UID | 662cbae0-6ab8-4ad9-a847-547e69b5c356 |
Language used | en |
Citeable Identifier | 1246.145.1291 |
Revision Number | 0.0.1-alpha |
All | Archetype [runtimeNameConstraintForConceptName=null, archetypeConceptBinding=null, archetypeConceptDescription=General sequencing result parameter., archetypeConceptComment=null, otherContributors=, originalLanguage=en, translators= , subjectOfData=unconstrained, archetypeTranslationTree=null, topLevelToAshis={relationships=[], source=[], capabilities=[], activities=[], details=[], context=[], ism_transition=[], other_participations=[], data=[], credentials=[], target=[], items=[ResourceSimplifiedHierarchyItem [path=/items[at0001], code=at0001, itemType=ELEMENT, level=1, text=Sequenced tissue type, description=Normal vs. tumor sample., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0006], code=at0006, itemType=ELEMENT, level=1, text=Tumor Mutational Burden (TMB) per Mb, description=Tumor Mutational Burden (TMB) per Megabase., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_COUNT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0008], code=at0008, itemType=ELEMENT, level=1, text=BRCAness, description=BRCAness is defined as a phenotypic copy of germline BRCA mutations., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_COUNT, bindings=null, values=min: >=0; max: <=1 , extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0009], code=at0009, itemType=CLUSTER, level=1, text=Further result parameter, description=Cluster to include additional result parameter not already defined above., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=1..*, cardinalityText= , subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0009]/items[at0013], code=at0013, itemType=ELEMENT, level=2, text=Parameter name, description=Parameter name., comment=null, uncommonOntologyItems=null, occurencesFormal=1..1, occurencesText=Mandatory, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0006], code=at0006, itemType=ELEMENT, level=1, text=Tumor Mutational Burden (TMB) per Mb, description=Tumor Mutational Burden (TMB) per Megabase., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_COUNT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0008], code=at0008, itemType=ELEMENT, level=1, text=BRCAness, description=BRCAness is defined as a phenotypic copy of germline BRCA mutations., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_COUNT, bindings=null, values=min: >=0; max: <=1 , extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0009], code=at0009, itemType=CLUSTER, level=1, text=Further result parameter, description=Cluster to include additional result parameter not already defined above., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=1..*, cardinalityText= , subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0009]/items[at0013], code=at0013, itemType=ELEMENT, level=2, text=Parameter name, description=Parameter name., comment=null, uncommonOntologyItems=null, occurencesFormal=1..1, occurencesText=Mandatory, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CHOICE, bindings=null, values=Choice of:
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