All | Archetype [runtimeNameConstraintForConceptName=null, archetypeConceptBinding=null, archetypeConceptDescription=Detailed information about the detected pathogen.
, archetypeConceptComment=null, otherContributors=, originalLanguage=de, translators=English: Sarah Ballout, MHH-Hanover, ballout.sarah@mh-hannover.de , subjectOfData=unconstrained, archetypeTranslationTree=null, topLevelToAshis={relationships=[], source=[], capabilities=[], activities=[], details=[], context=[], ism_transition=[], other_participations=[], data=[], credentials=[], target=[], items=[ResourceSimplifiedHierarchyItem [path=/items[at0047], code=at0047, itemType=ELEMENT, level=1, text=Germ subtype, description=In addition species identification, this subtype can be used for further identification of the pathogen, e.g. spa type in the case of S. aureus or MLST type., comment=Specific germ subtypes affect the immune response of the host.
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Possible reasons why null:
- masked
- not applicable
- unknown
- no information
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0003], code=at0003, itemType=ELEMENT, level=1, text=Frequency, description=Semi-quantitative information regarding the germination value., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=C_DV_ORDINAL, bindings=null, values=0: at0068::(+) [(+)] 1: at0069::+ [+] 2: at0070::++ [++] 3: at0071::+++ [+++] 4: at0072::++++ [++++] , extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0016], code=at0016, itemType=ELEMENT, level=1, text=Virulence factor, description=Details of the analysed
virulence characteristics or genes, e.g. PVL in S. aureus or EHEC in E. coli., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0064], code=at0064, itemType=SLOT, level=1, text=Antibiogram, description=The name of the antibiogram which has been used to determine the sensitivity or resistance of microbial pathogens to antibiotics., comment=Additional information is recorded in the archetypes "Laboratory Analytical Panel" and "Laboratory Test Panel"., uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=Include: openEHR-EHR-CLUSTER.laboratory_test_analyte.v0 and specialisations or openEHR-EHR-CLUSTER.laboratory_test_panel.v0 and specialisations, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0057], code=at0057, itemType=CLUSTER, level=1, text=Resistance mechanism, description=Information regarding the resistance mechanisms of the pathogen, e.g. ESBL or carbapenemase., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=1..*, cardinalityText= (Cardinality: 1..*, unordered), subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0057]/items[at0017], code=at0017, itemType=ELEMENT, level=2, text=Name of the resistance mechanism, description=The name of the resistance mechanism., comment=For example, the examination of a "Staphylococcus aureus"species, which represents the name of the germ., uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0057]/items[at0063], code=at0063, itemType=ELEMENT, level=2, text=Specialisation of the resistance mechanism, description=Further information about the resistance mechanism, comment=An example for this is the examination of a "Staphylococcus aureus" species, which represents the name of the germ. In the future, they would like to examine the "toxins" of the "Staphylococcus aureus".In this case the "toxins" would be the specialization of the examined germ., uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0018], code=at0018, itemType=ELEMENT, level=1, text=MRE class, description=Specification for the MRE classification of theexciter, e.g. 3MRGN or 4MRGN. In AER and MRSA there can be a redundancy to the resistance mechanism "methicillin resistance", which is not a problem., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0062], code=at0062, itemType=ELEMENT, level=1, text=Comment, description=Additional information about the pathogen., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0059], code=at0059, itemType=SLOT, level=1, text=Further additions, description=Use this cluster to include further additions to the pathogen details archetype., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=Include: openEHR-EHR-CLUSTER.address.v0 and specialisations or openEHR-EHR-CLUSTER.adhoc_cluster_heading.v0 and specialisations or openEHR-EHR-CLUSTER.anatomical_location.v0 and specialisations or openEHR-EHR-CLUSTER.case_identification.v0 and specialisations or openEHR-EHR-CLUSTER.conversion_variant.v0 and specialisations or openEHR-EHR-CLUSTER.death_details_parent.v0 and specialisations or openEHR-EHR-CLUSTER.deletion_variant.v0 and specialisations or openEHR-EHR-CLUSTER.device.v0 and specialisations or openEHR-EHR-CLUSTER.dosage.v0 and specialisations or openEHR-EHR-CLUSTER.duplication_variant.v0 and specialisations or openEHR-EHR-CLUSTER.dzhk_dataset_pacemaker_info.v0 and specialisations or openEHR-EHR-CLUSTER.dzhk_echocardiography_quality_level.v0 and specialisations or openEHR-EHR-CLUSTER.echocardiography_view_quality_assessment.v0 and specialisations or openEHR-EHR-CLUSTER.exam_lip.v0 and specialisations or openEHR-EHR-CLUSTER.exclusion_exam.v0 and specialisations or openEHR-EHR-CLUSTER.family_prevalence.v0 and specialisations or openEHR-EHR-CLUSTER.funktionseinheit.v0 and specialisations or openEHR-EHR-CLUSTER.gender.v0 and specialisations or openEHR-EHR-CLUSTER.histopathology_findings.v0 and specialisations or openEHR-EHR-CLUSTER.imaging_result.v0 and specialisations or openEHR-EHR-CLUSTER.indel_variant.v0 and specialisations or openEHR-EHR-CLUSTER.insertion_variant.v0 and specialisations or openEHR-EHR-CLUSTER.inversion_variant.v0 and specialisations or openEHR-EHR-CLUSTER.issue.v0 and specialisations or openEHR-EHR-CLUSTER.laboratory_test_analyte.v0 and specialisations or openEHR-EHR-CLUSTER.laboratory_test_panel.v0 and specialisations or openEHR-EHR-CLUSTER.level_of_exertion.v0 and specialisations or openEHR-EHR-CLUSTER.lymph_node_metastases.v0 and specialisations or openEHR-EHR-CLUSTER.medication.v0 and specialisations or openEHR-EHR-CLUSTER.multimedia.v0 and specialisations or openEHR-EHR-CLUSTER.nyha_heart_failure.v0 and specialisations or openEHR-EHR-CLUSTER.organisation.v0 and specialisations or openEHR-EHR-CLUSTER.organisationseinheiten.v0 and specialisations or openEHR-EHR-CLUSTER.quality_of_process.v0 and specialisations or openEHR-EHR-CLUSTER.Reference_sequence.v0 and specialisations or openEHR-EHR-CLUSTER.repeated_sequence_variant.v0 and specialisations or openEHR-EHR-CLUSTER.sample_device.v1 and specialisations or openEHR-EHR-CLUSTER.sample_level_of_exertion.v1 and specialisations or openEHR-EHR-CLUSTER.sample_symptom-pain.v1 and specialisations or openEHR-EHR-CLUSTER.sample_symptom.v1 and specialisations or openEHR-EHR-CLUSTER.Sequence_variation.v0 and specialisations or openEHR-EHR-CLUSTER.specimen.v0 and specialisations or openEHR-EHR-CLUSTER.specimen_preparation.v0 and specialisations or openEHR-EHR-CLUSTER.substitution_variant.v0 and specialisations or openEHR-EHR-CLUSTER.symptom_sign.v0 and specialisations or openEHR-EHR-CLUSTER.therapeutic_direction.v0 and specialisations or openEHR-EHR-CLUSTER.tnm_stage_clinical.v0 and specialisations or openEHR-EHR-CLUSTER.tumour_resection_margins.v0 and specialisations or openEHR-EHR-CLUSTER.weitere_klassifikation.v0 and specialisations, extendedValues=null]], content=[], description=[], contacts=[], state=[], events=[], provider=[], identities=[], protocol=[]}, topLevelItems={items=ResourceSimplifiedHierarchyItem [path=ROOT_/, code=at0000, itemType=CLUSTER, level=0, text=null, description=null, comment=null, uncommonOntologyItems=null, occurencesFormal=1..1, occurencesText=Mandatory, cardinalityFormal=1..*, cardinalityText= (Cardinality: 1..*, unordered), subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=null, extendedValues=null]}, addHierarchyItemsTo=items, currentHierarchyItemsForAdding=[ResourceSimplifiedHierarchyItem [path=/items[at0047], code=at0047, itemType=ELEMENT, level=1, text=Germ subtype, description=In addition species identification, this subtype can be used for further identification of the pathogen, e.g. spa type in the case of S. aureus or MLST type., comment=Specific germ subtypes affect the immune response of the host.
For example, a result of a spa-typing in S. aureus or other typings like MLST., uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0035], code=at0035, itemType=ELEMENT, level=1, text=Germination value, description=Quantitative information about the germ value, e.g. for urines., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=C_DV_QUANTITY, bindings=null, values=Property: Flow rate, volume Units: CFU/ml
Possible reasons why null:
- masked
- not applicable
- unknown
- no information
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virulence characteristics or genes, e.g. PVL in S. aureus or EHEC in E. coli., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0064], code=at0064, itemType=SLOT, level=1, text=Antibiogram, description=The name of the antibiogram which has been used to determine the sensitivity or resistance of microbial pathogens to antibiotics., comment=Additional information is recorded in the archetypes "Laboratory Analytical Panel" and "Laboratory Test Panel"., uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=Include: openEHR-EHR-CLUSTER.laboratory_test_analyte.v0 and specialisations or openEHR-EHR-CLUSTER.laboratory_test_panel.v0 and specialisations, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0057], code=at0057, itemType=CLUSTER, level=1, text=Resistance mechanism, description=Information regarding the resistance mechanisms of the pathogen, e.g. ESBL or carbapenemase., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=1..*, cardinalityText= (Cardinality: 1..*, unordered), subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0057]/items[at0017], code=at0017, itemType=ELEMENT, level=2, text=Name of the resistance mechanism, description=The name of the resistance mechanism., comment=For example, the examination of a "Staphylococcus aureus"species, which represents the name of the germ., uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0057]/items[at0063], code=at0063, itemType=ELEMENT, level=2, text=Specialisation of the resistance mechanism, description=Further information about the resistance mechanism, comment=An example for this is the examination of a "Staphylococcus aureus" species, which represents the name of the germ. In the future, they would like to examine the "toxins" of the "Staphylococcus aureus".In this case the "toxins" would be the specialization of the examined germ., uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0018], code=at0018, itemType=ELEMENT, level=1, text=MRE class, description=Specification for the MRE classification of theexciter, e.g. 3MRGN or 4MRGN. In AER and MRSA there can be a redundancy to the resistance mechanism "methicillin resistance", which is not a problem., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0062], code=at0062, itemType=ELEMENT, level=1, text=Comment, description=Additional information about the pathogen., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0059], code=at0059, itemType=SLOT, level=1, text=Further additions, description=Use this cluster to include further additions to the pathogen details archetype., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=Include: openEHR-EHR-CLUSTER.address.v0 and specialisations or openEHR-EHR-CLUSTER.adhoc_cluster_heading.v0 and specialisations or openEHR-EHR-CLUSTER.anatomical_location.v0 and specialisations or openEHR-EHR-CLUSTER.case_identification.v0 and specialisations or openEHR-EHR-CLUSTER.conversion_variant.v0 and specialisations or openEHR-EHR-CLUSTER.death_details_parent.v0 and specialisations or openEHR-EHR-CLUSTER.deletion_variant.v0 and specialisations or openEHR-EHR-CLUSTER.device.v0 and specialisations or openEHR-EHR-CLUSTER.dosage.v0 and specialisations or openEHR-EHR-CLUSTER.duplication_variant.v0 and specialisations or openEHR-EHR-CLUSTER.dzhk_dataset_pacemaker_info.v0 and specialisations or openEHR-EHR-CLUSTER.dzhk_echocardiography_quality_level.v0 and specialisations or openEHR-EHR-CLUSTER.echocardiography_view_quality_assessment.v0 and specialisations or openEHR-EHR-CLUSTER.exam_lip.v0 and specialisations or openEHR-EHR-CLUSTER.exclusion_exam.v0 and specialisations or openEHR-EHR-CLUSTER.family_prevalence.v0 and specialisations or openEHR-EHR-CLUSTER.funktionseinheit.v0 and specialisations or openEHR-EHR-CLUSTER.gender.v0 and specialisations or openEHR-EHR-CLUSTER.histopathology_findings.v0 and specialisations or openEHR-EHR-CLUSTER.imaging_result.v0 and specialisations or openEHR-EHR-CLUSTER.indel_variant.v0 and specialisations or openEHR-EHR-CLUSTER.insertion_variant.v0 and specialisations or openEHR-EHR-CLUSTER.inversion_variant.v0 and specialisations or openEHR-EHR-CLUSTER.issue.v0 and specialisations or openEHR-EHR-CLUSTER.laboratory_test_analyte.v0 and specialisations or openEHR-EHR-CLUSTER.laboratory_test_panel.v0 and specialisations or openEHR-EHR-CLUSTER.level_of_exertion.v0 and specialisations or openEHR-EHR-CLUSTER.lymph_node_metastases.v0 and specialisations or openEHR-EHR-CLUSTER.medication.v0 and specialisations or openEHR-EHR-CLUSTER.multimedia.v0 and specialisations or openEHR-EHR-CLUSTER.nyha_heart_failure.v0 and specialisations or openEHR-EHR-CLUSTER.organisation.v0 and specialisations or openEHR-EHR-CLUSTER.organisationseinheiten.v0 and specialisations or openEHR-EHR-CLUSTER.quality_of_process.v0 and specialisations or openEHR-EHR-CLUSTER.Reference_sequence.v0 and specialisations or openEHR-EHR-CLUSTER.repeated_sequence_variant.v0 and specialisations or openEHR-EHR-CLUSTER.sample_device.v1 and specialisations or openEHR-EHR-CLUSTER.sample_level_of_exertion.v1 and specialisations or openEHR-EHR-CLUSTER.sample_symptom-pain.v1 and specialisations or openEHR-EHR-CLUSTER.sample_symptom.v1 and specialisations or openEHR-EHR-CLUSTER.Sequence_variation.v0 and specialisations or openEHR-EHR-CLUSTER.specimen.v0 and specialisations or openEHR-EHR-CLUSTER.specimen_preparation.v0 and specialisations or openEHR-EHR-CLUSTER.substitution_variant.v0 and specialisations or openEHR-EHR-CLUSTER.symptom_sign.v0 and specialisations or openEHR-EHR-CLUSTER.therapeutic_direction.v0 and specialisations or openEHR-EHR-CLUSTER.tnm_stage_clinical.v0 and specialisations or openEHR-EHR-CLUSTER.tumour_resection_margins.v0 and specialisations or openEHR-EHR-CLUSTER.weitere_klassifikation.v0 and specialisations, extendedValues=null]], minIndents={}, termBindingRetrievalErrorMessage=null] |