ARCHETYPE Pathogen details (openEHR-EHR-CLUSTER.erregerdetails.v1)

ARCHETYPE IDopenEHR-EHR-CLUSTER.erregerdetails.v1
ConceptPathogen details
DescriptionDetailed information about the detected pathogen.
UseUsed to record, in addition to the Cluser.Labatory Test Result - Archetypes, for example, germ counts and frequency, subtyping, MRE class for the pathogens detected.
MisuseDo not use this archetype to represent general laboratory test results.
PurposeUse to record additional information or observations on a pathogen detected in the laboratory, e.g. germ count and frequency, subtyping, MRE class, etc.
References
Copyright© HiGHmed
AuthorsAuthor name: Sarah Ballout
Organisation: MHH-Hanover
Email: ballout.sarah@mh-hannover.de
Date originally authored: 2020-03-05
Other Details LanguageAuthor name: Sarah Ballout
Organisation: MHH-Hanover
Email: ballout.sarah@mh-hannover.de
Date originally authored: 2020-03-05
OtherDetails Language Independent{licence=This work is licensed under the Creative Commons Attribution-ShareAlike 3.0 License. To view a copy of this license, visit http://creativecommons.org/licenses/by-sa/3.0/., custodian_organisation=HiGHmed, original_namespace=org.highmed, original_publisher=HiGHmed, custodian_namespace=org.highmed, MD5-CAM-1.0.1=93C0884D18B21980A99A7398E04E9E7A, build_uid=d3cacd8f-d81b-4e82-8624-fae38d492626, revision=1.1.2-alpha}
KeywordsPathogen, Germ, Virulence factor, Germ value
Lifecyclein_development
UIDf9a8f220-9937-476b-8845-ba616889ebff
Language useden
Citeable Identifier1246.145.322
Revision Number1.1.2-alpha
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Units:
  • KbE/ml


Possible reasons why null:
  • masked
  • not applicable
  • unknown
  • no information
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0003], code=at0003, itemType=ELEMENT, level=1, text=Frequency, description=Semi-quantitative information regarding the germination value., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=C_DV_ORDINAL, bindings=null, values=0: (+) [(+)]
1: + [+]
2: ++ [++]
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4: ++++ [++++]
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openEHR-EHR-CLUSTER.laboratory_test_analyte.v0 and specialisations Or
openEHR-EHR-CLUSTER.laboratory_test_panel.v0 and specialisations, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0057], code=at0057, itemType=CLUSTER, level=1, text=Resistance mechanism, description=Information regarding the resistance mechanisms of the pathogen, e.g. ESBL or carbapenemase., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=1..*, cardinalityText=, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0057]/items[at0017], code=at0017, itemType=ELEMENT, level=2, text=Name of the resistance mechanism, description=The name of the resistance mechanism., comment=For example, the examination of a "Staphylococcus aureus"species, which represents the name of the germ., uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0057]/items[at0063], code=at0063, itemType=ELEMENT, level=2, text=Specialisation of the resistance mechanism, description=Further information about the resistance mechanism, comment=An example for this is the examination of a "Staphylococcus aureus" species, which represents the name of the germ. In the future, they would like to examine the "toxins" of the "Staphylococcus aureus".In this case the "toxins" would be the specialization of the examined germ., uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0018], code=at0018, itemType=ELEMENT, level=1, text=MRE class, description=Specification for the MRE classification of theexciter, e.g. 3MRGN or 4MRGN. In AER and MRSA there can be a redundancy to the resistance mechanism "methicillin resistance", which is not a problem., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=
  • MRSA [Methicillin-resistenter Staphylococcus aureus (und CA- community-acquired, LA – lifestock acquired, HA – hospital acquired)]
  • VRE [Vancomycin-resistente Enterococcus.]
  • LVRE [Linezolid-Vancomycin-resistente Enterococcus.]
  • LRE [Linezolid-resistente Enterococcus]
  • 2MRGN [Multiresistant Gramnegative bacteria (resistance to 2 of the 4 antibiotic groups).]
  • 3MRGN [Multiresistant Gramnegative bacteria (resistance to 3 of the 4 antibiotic groups).]
  • 4MRGN [Multiresistant Gramnegative bacteria (resistance to 4 of the 4 antibiotic groups).]
, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0062], code=at0062, itemType=ELEMENT, level=1, text=Comment, description=Additional information about the pathogen., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0059], code=at0059, itemType=SLOT, level=1, text=Further additions, description=Use this cluster to include further additions to the pathogen details archetype., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=Include:
openEHR-EHR-CLUSTER.address.v0 and specialisations Or
openEHR-EHR-CLUSTER.adhoc_cluster_heading.v0 and specialisations Or
openEHR-EHR-CLUSTER.anatomical_location.v0 and specialisations Or
openEHR-EHR-CLUSTER.case_identification.v0 and specialisations Or
openEHR-EHR-CLUSTER.conversion_variant.v0 and specialisations Or
openEHR-EHR-CLUSTER.death_details_parent.v0 and specialisations Or
openEHR-EHR-CLUSTER.deletion_variant.v0 and specialisations Or
openEHR-EHR-CLUSTER.device.v0 and specialisations Or
openEHR-EHR-CLUSTER.dosage.v0 and specialisations Or
openEHR-EHR-CLUSTER.duplication_variant.v0 and specialisations Or
openEHR-EHR-CLUSTER.dzhk_dataset_pacemaker_info.v0 and specialisations Or
openEHR-EHR-CLUSTER.dzhk_echocardiography_quality_level.v0 and specialisations Or
openEHR-EHR-CLUSTER.echocardiography_view_quality_assessment.v0 and specialisations Or
openEHR-EHR-CLUSTER.exam_lip.v0 and specialisations Or
openEHR-EHR-CLUSTER.exclusion_exam.v0 and specialisations Or
openEHR-EHR-CLUSTER.family_prevalence.v0 and specialisations Or
openEHR-EHR-CLUSTER.funktionseinheit.v0 and specialisations Or
openEHR-EHR-CLUSTER.gender.v0 and specialisations Or
openEHR-EHR-CLUSTER.histopathology_findings.v0 and specialisations Or
openEHR-EHR-CLUSTER.imaging_result.v0 and specialisations Or
openEHR-EHR-CLUSTER.indel_variant.v0 and specialisations Or
openEHR-EHR-CLUSTER.insertion_variant.v0 and specialisations Or
openEHR-EHR-CLUSTER.inversion_variant.v0 and specialisations Or
openEHR-EHR-CLUSTER.issue.v0 and specialisations Or
openEHR-EHR-CLUSTER.laboratory_test_analyte.v0 and specialisations Or
openEHR-EHR-CLUSTER.laboratory_test_panel.v0 and specialisations Or
openEHR-EHR-CLUSTER.level_of_exertion.v0 and specialisations Or
openEHR-EHR-CLUSTER.lymph_node_metastases.v0 and specialisations Or
openEHR-EHR-CLUSTER.medication.v0 and specialisations Or
openEHR-EHR-CLUSTER.multimedia.v0 and specialisations Or
openEHR-EHR-CLUSTER.nyha_heart_failure.v0 and specialisations Or
openEHR-EHR-CLUSTER.organisation.v0 and specialisations Or
openEHR-EHR-CLUSTER.organisationseinheiten.v0 and specialisations Or
openEHR-EHR-CLUSTER.quality_of_process.v0 and specialisations Or
openEHR-EHR-CLUSTER.Reference_sequence.v0 and specialisations Or
openEHR-EHR-CLUSTER.repeated_sequence_variant.v0 and specialisations Or
openEHR-EHR-CLUSTER.sample_device.v1 and specialisations Or
openEHR-EHR-CLUSTER.sample_level_of_exertion.v1 and specialisations Or
openEHR-EHR-CLUSTER.sample_symptom-pain.v1 and specialisations Or
openEHR-EHR-CLUSTER.sample_symptom.v1 and specialisations Or
openEHR-EHR-CLUSTER.Sequence_variation.v0 and specialisations Or
openEHR-EHR-CLUSTER.specimen.v0 and specialisations Or
openEHR-EHR-CLUSTER.specimen_preparation.v0 and specialisations Or
openEHR-EHR-CLUSTER.substitution_variant.v0 and specialisations Or
openEHR-EHR-CLUSTER.symptom_sign.v0 and specialisations Or
openEHR-EHR-CLUSTER.therapeutic_direction.v0 and specialisations Or
openEHR-EHR-CLUSTER.tnm_stage_clinical.v0 and specialisations Or
openEHR-EHR-CLUSTER.tumour_resection_margins.v0 and specialisations Or
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Units:
  • KbE/ml


Possible reasons why null:
  • masked
  • not applicable
  • unknown
  • no information
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1: + [+]
2: ++ [++]
3: +++ [+++]
4: ++++ [++++]
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openEHR-EHR-CLUSTER.laboratory_test_analyte.v0 and specialisations Or
openEHR-EHR-CLUSTER.laboratory_test_panel.v0 and specialisations, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0057], code=at0057, itemType=CLUSTER, level=1, text=Resistance mechanism, description=Information regarding the resistance mechanisms of the pathogen, e.g. ESBL or carbapenemase., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=1..*, cardinalityText=, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0057]/items[at0017], code=at0017, itemType=ELEMENT, level=2, text=Name of the resistance mechanism, description=The name of the resistance mechanism., comment=For example, the examination of a "Staphylococcus aureus"species, which represents the name of the germ., uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0057]/items[at0063], code=at0063, itemType=ELEMENT, level=2, text=Specialisation of the resistance mechanism, description=Further information about the resistance mechanism, comment=An example for this is the examination of a "Staphylococcus aureus" species, which represents the name of the germ. In the future, they would like to examine the "toxins" of the "Staphylococcus aureus".In this case the "toxins" would be the specialization of the examined germ., uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=/items[at0018], code=at0018, itemType=ELEMENT, level=1, text=MRE class, description=Specification for the MRE classification of theexciter, e.g. 3MRGN or 4MRGN. In AER and MRSA there can be a redundancy to the resistance mechanism "methicillin resistance", which is not a problem., comment=null, uncommonOntologyItems=null, occurencesFormal=0..1, occurencesText=Optional, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=
  • MRSA [Methicillin-resistenter Staphylococcus aureus (und CA- community-acquired, LA – lifestock acquired, HA – hospital acquired)]
  • VRE [Vancomycin-resistente Enterococcus.]
  • LVRE [Linezolid-Vancomycin-resistente Enterococcus.]
  • LRE [Linezolid-resistente Enterococcus]
  • 2MRGN [Multiresistant Gramnegative bacteria (resistance to 2 of the 4 antibiotic groups).]
  • 3MRGN [Multiresistant Gramnegative bacteria (resistance to 3 of the 4 antibiotic groups).]
  • 4MRGN [Multiresistant Gramnegative bacteria (resistance to 4 of the 4 antibiotic groups).]
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openEHR-EHR-CLUSTER.address.v0 and specialisations Or
openEHR-EHR-CLUSTER.adhoc_cluster_heading.v0 and specialisations Or
openEHR-EHR-CLUSTER.anatomical_location.v0 and specialisations Or
openEHR-EHR-CLUSTER.case_identification.v0 and specialisations Or
openEHR-EHR-CLUSTER.conversion_variant.v0 and specialisations Or
openEHR-EHR-CLUSTER.death_details_parent.v0 and specialisations Or
openEHR-EHR-CLUSTER.deletion_variant.v0 and specialisations Or
openEHR-EHR-CLUSTER.device.v0 and specialisations Or
openEHR-EHR-CLUSTER.dosage.v0 and specialisations Or
openEHR-EHR-CLUSTER.duplication_variant.v0 and specialisations Or
openEHR-EHR-CLUSTER.dzhk_dataset_pacemaker_info.v0 and specialisations Or
openEHR-EHR-CLUSTER.dzhk_echocardiography_quality_level.v0 and specialisations Or
openEHR-EHR-CLUSTER.echocardiography_view_quality_assessment.v0 and specialisations Or
openEHR-EHR-CLUSTER.exam_lip.v0 and specialisations Or
openEHR-EHR-CLUSTER.exclusion_exam.v0 and specialisations Or
openEHR-EHR-CLUSTER.family_prevalence.v0 and specialisations Or
openEHR-EHR-CLUSTER.funktionseinheit.v0 and specialisations Or
openEHR-EHR-CLUSTER.gender.v0 and specialisations Or
openEHR-EHR-CLUSTER.histopathology_findings.v0 and specialisations Or
openEHR-EHR-CLUSTER.imaging_result.v0 and specialisations Or
openEHR-EHR-CLUSTER.indel_variant.v0 and specialisations Or
openEHR-EHR-CLUSTER.insertion_variant.v0 and specialisations Or
openEHR-EHR-CLUSTER.inversion_variant.v0 and specialisations Or
openEHR-EHR-CLUSTER.issue.v0 and specialisations Or
openEHR-EHR-CLUSTER.laboratory_test_analyte.v0 and specialisations Or
openEHR-EHR-CLUSTER.laboratory_test_panel.v0 and specialisations Or
openEHR-EHR-CLUSTER.level_of_exertion.v0 and specialisations Or
openEHR-EHR-CLUSTER.lymph_node_metastases.v0 and specialisations Or
openEHR-EHR-CLUSTER.medication.v0 and specialisations Or
openEHR-EHR-CLUSTER.multimedia.v0 and specialisations Or
openEHR-EHR-CLUSTER.nyha_heart_failure.v0 and specialisations Or
openEHR-EHR-CLUSTER.organisation.v0 and specialisations Or
openEHR-EHR-CLUSTER.organisationseinheiten.v0 and specialisations Or
openEHR-EHR-CLUSTER.quality_of_process.v0 and specialisations Or
openEHR-EHR-CLUSTER.Reference_sequence.v0 and specialisations Or
openEHR-EHR-CLUSTER.repeated_sequence_variant.v0 and specialisations Or
openEHR-EHR-CLUSTER.sample_device.v1 and specialisations Or
openEHR-EHR-CLUSTER.sample_level_of_exertion.v1 and specialisations Or
openEHR-EHR-CLUSTER.sample_symptom-pain.v1 and specialisations Or
openEHR-EHR-CLUSTER.sample_symptom.v1 and specialisations Or
openEHR-EHR-CLUSTER.Sequence_variation.v0 and specialisations Or
openEHR-EHR-CLUSTER.specimen.v0 and specialisations Or
openEHR-EHR-CLUSTER.specimen_preparation.v0 and specialisations Or
openEHR-EHR-CLUSTER.substitution_variant.v0 and specialisations Or
openEHR-EHR-CLUSTER.symptom_sign.v0 and specialisations Or
openEHR-EHR-CLUSTER.therapeutic_direction.v0 and specialisations Or
openEHR-EHR-CLUSTER.tnm_stage_clinical.v0 and specialisations Or
openEHR-EHR-CLUSTER.tumour_resection_margins.v0 and specialisations Or
openEHR-EHR-CLUSTER.weitere_klassifikation.v0 and specialisations, extendedValues=null]], minIndents={}, termBindingRetrievalErrorMessage=null]