TEMPLATE Radiomics segmentation report (Radiomics segmentation report)

TEMPLATE IDRadiomics segmentation report
ConceptRadiomics segmentation report
DescriptionNot Specified
PurposeNot Specified
References
Authorsdate: 2021-01-12; name: test
Other Details Languagedate: 2021-01-12; name: test
OtherDetails Language Independent{PARENT:MD5-CAM-1.0.1=005501C1FA493A4838F5F1121F2870EC, original_language=ISO_639-1::en, MD5-CAM-1.0.1=7f76b1d2fdb249fa7c01629124d652c0, sem_ver=8.0.0}
Language useden
Citeable Identifier1246.169.2316
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Possible candidate terminologies are LOINC, SNOMED CT or RadLex., uncommonOntologyItems=null, occurencesFormal=1..1, occurencesText=Mandatory, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/data[at0001]/events[at0002]/data[at0003]/items[at0005], code=at0005, itemType=ELEMENT, level=5, text=Modality, description=Type of equipment that originally acquired the image or series of images., comment=Also known as 'Examination type'. For example: Ultrasound; Computed tomography; or X-ray. Coding with a terminology is desirable, where possible. If the modality is specified by a code in the 'Test name', then this field may be redundant., uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.anatomical_location.v1], code=at0000, itemType=CLUSTER, level=5, text=Anatomical location, description=A physical site on or within the human body., comment=null, uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.anatomical_location.v1]/items[at0001], code=at0001, itemType=ELEMENT, level=6, text=Body site name, description=Identification of a single physical site either on, or within, the human body., comment=This data element is the only mandated data point in this archetype and should be used as the primary data point to record an anatomical location with a commonly used name. It is strongly recommended that 'Body site name' be recorded as specifically as is anatomically possible. For example: record 'upper eyelid' rather than recording 'eyelid' with 'upper' as a qualifier; 'fifth rib' rather than 'rib' with a numeric qualifier. Use the other data elements for laterality, aspect, region and anatomical line to provide more detail. This data element should be coded with a terminology capable of triggering decision support, where possible - an appropriate termset for use here could comprise individual concepts or a list of precoordinated terms. Free text should be used only if there is no appropriate terminology available. If body site name is already identified in the parent archetype, then this data element may be redundant. Alternatively, a use case has been identified where the value may be duplicated into this element to support semantic querying using this archetype, rather than the data element within the parent., uncommonOntologyItems=null, occurencesFormal=1..1, occurencesText=Mandatory, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.anatomical_location.v1]/items[at0065], code=at0065, itemType=ELEMENT, level=6, text=Specific site, description=Additional detail using a specific region or a point on, or within, the identified body site., comment=Use to increase precision of identification of the body site, if required. For example, the upper right quadrant or McBurney's point on the abdominal wall or interphalangeal joint of the great toe. If the 'Body site name' data element uses pre-coordinated terms that include the specific site, then this data element is redundant., uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.anatomical_location.v1]/items[at0002], code=at0002, itemType=ELEMENT, level=6, text=Laterality, description=The side of the body on which the identified body site is located., comment=If the identified body site has no laterality, this data element should not have a value. If the 'Body site name' data element uses pre-coordinated terms that include laterality, then this data element is redundant., uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=
  • Left 
  • Right 
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  •  Coded Text
    • Medial 
    • Lateral 
    • Superior 
    • Inferior 
    • Anterior 
    • Posterior 
    • Proximal 
    • Distal 
    • Deep 
    • Superficial 
    • Palmar 
    • Plantar 
    • Dorsal 
    • Mid 
    • Oral 
    • Anal 
  •  Text
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  •  Coded Text
    • Midline 
    • Midaxillary line 
    • Anterior axillary line 
    • Posterior axillary line 
    • Mid-clavicular line 
    • Mid-pupillary line 
    • Mid-scapular line 
  •  Text
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  • Registered 
  • Interim 
  • Final 
  • Amended 
  • Cancelled / Aborted 
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The representation of a segmentation with this archetype contains information about the segmentation itself (name and date and time of creation). Furthermore, references to the image used and the segmented mask in DICOM. Segmentation Property Type and Segmentation Property Category and optionally their modification with Segmented Propety Type Modifier are used to represent properties of a segmentation., comment=null, uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.imaging_finding.v0]/items[openEHR-EHR-CLUSTER.segmentation_information_entity.v0]/items[at0042], code=at0042, itemType=ELEMENT, level=7, text=Object name, description=Human readable string that specifies/names the lesion., comment=If the Object instance and its location instances originate from a DICOM Segmentation, the Tracking ID (0062,0020) is a suitable source for this information., uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_TEXT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.imaging_finding.v0]/items[openEHR-EHR-CLUSTER.segmentation_information_entity.v0]/items[openEHR-EHR-CLUSTER.dicom_segmentation_information_object_definition.v0], code=at0000, itemType=CLUSTER, level=7, text=DICOM segmentation information object definition, description=A DICOM segmentation information object specifies the segmentation of an semantic object in a given spatial geometry., comment=null, uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.imaging_finding.v0]/items[openEHR-EHR-CLUSTER.segmentation_information_entity.v0]/items[openEHR-EHR-CLUSTER.dicom_segmentation_information_object_definition.v0]/items[at0001], code=at0001, itemType=ELEMENT, level=8, text=DCM Segmentation UID, description=Unique identifier of the location/segmentation done of an object. Corresponds to the DICOM SOP Instance UID of the segmentation (0008,0018)., comment=null, uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_IDENTIFIER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.imaging_finding.v0]/items[openEHR-EHR-CLUSTER.segmentation_information_entity.v0]/items[openEHR-EHR-CLUSTER.dicom_segmentation_information_object_definition.v0]/items[at0002], code=at0002, itemType=ELEMENT, level=8, text=Name, description=User-defined label identifying this segmentation. Corresponds to the DICOM Segment Label (0062,0005)., comment=null, uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=Value set: external, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.imaging_finding.v0]/items[openEHR-EHR-CLUSTER.segmentation_information_entity.v0]/items[openEHR-EHR-CLUSTER.dicom_segmentation_information_object_definition.v0]/items[at0003], code=at0003, itemType=ELEMENT, level=8, text=Creation date and time, description=The date and time the image pixel data creation started. Corresponds to the DICOM Content Date (0008,0023) and the DICOM Content Time (0008,0033)., comment=null, uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_DATE_TIME, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.imaging_finding.v0]/items[openEHR-EHR-CLUSTER.segmentation_information_entity.v0]/items[openEHR-EHR-CLUSTER.dicom_segmentation_information_object_definition.v0]/items[at0005], code=at0005, itemType=ELEMENT, level=8, text=Segment number, description=Segment Number (0062,0004) that indentifies the label within the segmentation object., comment=null, uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_COUNT, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.imaging_finding.v0]/items[openEHR-EHR-CLUSTER.segmentation_information_entity.v0]/items[openEHR-EHR-CLUSTER.dicom_segmentation_property.v0], code=at0000, itemType=CLUSTER, level=7, text=DICOM segmentation property, description=A segmentation property specifies a property of a segmentation to encode semantic characteristics. For example, if Segmention Property is "Kidney", Segmentation Property Type Modifier can be "Left" to specify laterality. More modifier codes are available in part 16 of the DICOM standard, as an example see CID 2 Anatomic Modifier., comment=null, uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.imaging_finding.v0]/items[openEHR-EHR-CLUSTER.segmentation_information_entity.v0]/items[openEHR-EHR-CLUSTER.dicom_segmentation_property.v0]/items[at0002], code=at0002, itemType=ELEMENT, level=8, text=Segmentation property category code, description=Code of the segmentation property category. Refers to DICOM CID 7150 Segmentation Property Categories., comment=null, uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=Value set: external, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.imaging_finding.v0]/items[openEHR-EHR-CLUSTER.segmentation_information_entity.v0]/items[openEHR-EHR-CLUSTER.dicom_segmentation_property.v0]/items[at0003], code=at0003, itemType=ELEMENT, level=8, text=Segmentation property type code, description=Type of the segementation property category. Refers to DICOM CID 7151 Segmentation Property Types., comment=null, uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=Value set: external, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.imaging_finding.v0]/items[openEHR-EHR-CLUSTER.segmentation_information_entity.v0]/items[openEHR-EHR-CLUSTER.dicom_segmentation_property.v0]/items[at0004], code=at0004, itemType=CLUSTER, level=8, text=Segmentation property type modifier, description=Attributes that can be used to modify the Segmented Property Type given for the referenced segmentation., comment=For example, if Segmentation Property Type Modifier is "Kidney", Segmentation Property Type Modifier can be "Left" to specify laterality. More modifier codes are available in part 16 of the DICOM standard, as an example see CID 2 Anatomic Modifier., uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.imaging_finding.v0]/items[openEHR-EHR-CLUSTER.segmentation_information_entity.v0]/items[openEHR-EHR-CLUSTER.dicom_segmentation_property.v0]/items[at0004]/items[at0005], code=at0005, itemType=ELEMENT, level=9, text=Segmentation property type modifier UID, description=Identifier of the segmentation property type modifier., comment=null, uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_IDENTIFIER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/data[at0001]/events[at0002]/data[at0003]/items[openEHR-EHR-CLUSTER.imaging_finding.v0]/items[openEHR-EHR-CLUSTER.segmentation_information_entity.v0]/items[openEHR-EHR-CLUSTER.dicom_segmentation_property.v0]/items[at0004]/items[at0006], code=at0006, itemType=ELEMENT, level=9, text=Segmentation property type modifier code, description=Attribute that augments segmented property type code., comment=null, uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_CODED_TEXT, bindings=null, values=Value set: external, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/protocol[at0025], code=at0025, itemType=UNSUPPORTEDTOPLEVELATTRIBUTE, level=2, text=Protocol, description=, comment=null, uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=UNSUPPORTEDTOPLEVELATTRIBUTE, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/protocol[at0025]/items[at0031], code=at0031, itemType=ELEMENT, level=3, text=Order identifier, description=The local identifier assigned to the examination order by the order filler, usually by the receiving Radiology Information System (RIS). Usually equivalent to the HL7 Filler Order Number., comment=null, uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_IDENTIFIER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/protocol[at0025]/items[at0036], code=at0036, itemType=ELEMENT, level=3, text=DICOM study identifier, description=Unique identifier of the reported study allocated by the imaging service., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_IDENTIFIER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/protocol[at0025]/items[at0033], code=at0033, itemType=ELEMENT, level=3, text=Report identifier, description=The local identifier given to the imaging examination report., comment=null, uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_IDENTIFIER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/protocol[at0025]/items[openEHR-EHR-CLUSTER.imaging_series.v0], code=at0000, itemType=CLUSTER, level=3, text=Imaging series, description=Details about a series of images, as part of a DICOM study., comment=null, uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/protocol[at0025]/items[openEHR-EHR-CLUSTER.imaging_series.v0]/items[at0016], code=at0016, itemType=ELEMENT, level=4, text=Series instance identifier, description=Unique identifier for the imaging series assigned by the radiology service., comment=Equivalent to FHIR ImagingStudy.identifier and DICOM Series Instance UID (0020,000E)., uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_IDENTIFIER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/protocol[at0025]/items[at0064], code=at0064, itemType=CLUSTER, level=3, text=Comparison images, description=Details about an image or series being compared to the reported image., comment=null, uncommonOntologyItems=null, occurencesFormal=0..*, occurencesText=Optional, repeating, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=CLUSTER, bindings=null, values=, extendedValues=null], ResourceSimplifiedHierarchyItem [path=[openEHR-EHR-COMPOSITION.report.v1]/content[openEHR-EHR-OBSERVATION.imaging_exam_result.v0]/protocol[at0025]/items[at0064]/items[at0068], code=at0068, itemType=ELEMENT, level=4, text=DICOM series identifier, description=Unique identifier of the reported series allocated by the imaging service., comment=null, uncommonOntologyItems=null, occurencesFormal=null, occurencesText=null, cardinalityFormal=null, cardinalityText=null, subCardinalityFormal=null, subCardinalityText=null, dataType=DV_IDENTIFIER, bindings=null, values=, extendedValues=null]], templateType=normal]